Scaffold BBAY88_1287897

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold BBAY88_1287897

Scaffold BBAY88_1287897

Overview

Basic Information
Taxon OID	3300001183 Open in IMG/M
Scaffold ID	BBAY88_1287897 Open in IMG/M
Source Dataset Name	Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY88
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	38657
Total Scaffold Genes	80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (17.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface → Macroalgal Surface Microbial Communities

Source Dataset Sampling Location
Location Name	Botany Bay, Sydney, NSW, Australia
Coordinates	Lat. (^o)	-33.966629	Long. (^o)	151.166614	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000352	Metagenome / Metatranscriptome	1247	Y
F012788	Metagenome / Metatranscriptome	277	Y

Sequences

Protein ID	Family	RBS	Sequence
BBAY88_128789739	F000352	N/A	MKEPSMRSIKLSEGDALFVNHVLRMYAKQTSGLDSEDIVEINIVADKFKL*
BBAY88_128789749	F012788	N/A	MQINSERKELILATIDELNQYLNGYVTTPSLLITLDELYRKL*

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