Scaffold JGI12695J13573

Basic Information
Taxon OID	3300001180 Open in IMG/M
Scaffold ID	JGI12695J13573_1000125 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001180 Open in IMG/M

Scaffold ID

JGI12695J13573_1000125 Open in IMG/M

Source Dataset Name

Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10985
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (76.92%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

10985

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (76.92%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Thunder Bay, Ontario, Canada
Coordinates	Lat. (^o)	49.08	Long. (^o)	-89.38	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Thunder Bay, Ontario, Canada

Coordinates

Lat. (^o)

49.08

Long. (^o)

-89.38

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004246	Metagenome / Metatranscriptome	447	Y
F011101	Metagenome / Metatranscriptome	295	Y
F085999	Metagenome / Metatranscriptome	111	Y
F095814	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12695J13573_10001252	F004246	GAGG	MLDDWDERDEVVAEGSICPVTDCGALVISYRPPDRTGRINARSWCEFTCSRCGIDFNVPEDELIFQSVPKEWLLARVQTA*
JGI12695J13573_10001257	F095814	AGGAG	MLQSVVELLFGLFLSALILLVGSCILGSIVAALRAVNRESDGEREKVKEIFTFGAEVTVLDNRLIETGVILMTNTENHYELGR*
JGI12695J13573_10001258	F011101	AGGA	MQHRATKFASAAFFITSLALASDTWILDADTSNARLFRGSRANSDSVNTGVARVIGKVKLDTNDLDASFFDLSIYPADENWGHVLSPEGTLPTSYAPDATDQTLLTFKSTRILRTGNGRLEVIGDLTLTRVDRDVTASPLEDYAGPVYGDPVIHNVTREITFLFPSVSAAYASGPLTPAMLQTKGVLEIVGAARVDREEFPELISAIKETNWPPVAQNKDCMPSSAGEDYSGTVCTATLIAPTRGNNRGMPDSVGEDYSGPQCTPATSNQTIVLDLKFLHKVPEPSVEAHSGKESSGNAAPGRLNRNSN*
JGI12695J13573_10001259	F085999	N/A	MNAMKTILKIRTLICIVLAVGALLSTPGADASDSDSYPSYLEAKVIAHLPLSGGIRRMFLQQEGRRQFLYVQQPSQHGVTVIDITKPERPKVVNQVPLENLTMVSSGLAIFETPENSATVGASLATGNAEGAQGSGVLESVRVLDVSDPAHPRTVQNFDGVTSILQDSAQNLLYVANGDGVWIVSHQQVLHRHECSSSDAISPLPNCD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI12695J13573_1000125

Overview

Ecosystem & Geography

Associated Families

Sequences