Scaffold JGI12654J13325_1007670

Overview

Basic Information

• Taxon OID: 3300001160
• Scaffold ID: JGI12654J13325_1007670
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 728
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001837	Metagenome / Metatranscriptome	628	Y
F021375	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12654J13325_10076701	F001837	AGGA	LTRHRFEAYLDKVFGFSDLVSALPEGRQFPQHPWKRVFDCVFLGAAMQIPSLLQIEAECHDGALAKRIGSISDDTIGYALERQSPEPVFALSCEIARRLKRNGVLHSDWSRGLVVAAVDGIEICSSFARCCDACMEREVQHKVNGEMRTDIQYHHRIVVAALVSTPFPIPLGVRFQ
JGI12654J13325_10076702	F021375	N/A	DGKNLHSQFQISVLIEGQPKVFHVPAKWAEKVREKTEMRRRFDAAAATICSVNLKRFLKEKEDRQA*