Scaffold JGI12654J13325_1000072

Overview

Basic Information

• Taxon OID: 3300001160
• Scaffold ID: JGI12654J13325_1000072
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3116
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000646	Metagenome / Metatranscriptome	962	Y
F001083	Metagenome / Metatranscriptome	783	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12654J13325_10000722	F000646	AGGAG	MKIKLLLCVILAGCTFGFAKEKSEVRDITGCLSKGDSAKEFLLTGNDGSTWEVRSSRVALAEHVGHTVTATGVVSNAKMHNMKEDAKEAAKDSGMKKSDAEHGHLTVTEVKMVSDSCK*
JGI12654J13325_10000725	F001083	GGAG	MDTNEKQIALSVLEGLRADLMYAHLKNGGRILDVANLRQYTYEQMGRIRTNALVMDGLYANDNGHGHDLGKSNGHNGKAYT*