Scaffold JGI12636J13339_1000274

Overview

Basic Information

• Taxon OID: 3300001154
• Scaffold ID: JGI12636J13339_1000274
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8523
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000173	Metagenome / Metatranscriptome	1777	Y
F001983	Metagenome / Metatranscriptome	608	Y
F010863	Metagenome / Metatranscriptome	298	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12636J13339_10002746	F001983	AGGA	MTRKNTWARLVVAVVLSLPLTACKDTKTLQENEQLKAQVAELQKENGQLGNDLETMTAARDTLTKENEALKAESKARKTKHSGTKAASRKRRRN*
JGI12636J13339_10002747	F000173	GGAGG	MKTFEVQFRYRDRNEGTAESTVKVEASSLPGAVGKATRQFVKGLDRKQRFDMNKNGLEITAKSISTTTEAQASAEAAAS*
JGI12636J13339_10002749	F010863	AGGA	MFSVVGLTLDEVSVGSLPHVHLAKTLDNRMTKSNFRYAEIILVYTTVETDTQGLVARTKYREQGQFLVFLYFNDAAVEACKEIGIPIRVLDRIDECELPSRRATVLERPYLAPVSK*