Scaffold JGI12713J13577_1001921

Overview

Basic Information

• Taxon OID: 3300001151
• Scaffold ID: JGI12713J13577_1001921
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2018
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002473	Metagenome / Metatranscriptome	556	Y
F092513	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12713J13577_10019211	F092513	N/A	FLARLTLPNSEELVSFFAMNSQVIDASGKKWDREEIRKGFETLFAPYAKKNASYFVEATLATTRELFVANILWKNALLASEQRAWMHRMSVVLFFEEDIWKILLAQVTPMQISVPPSSKESS*
JGI12713J13577_10019213	F002473	N/A	MGTVLIVAGLVLVGVSTWSRAEGREKTTQAGALIIVVGAVLLGLSIFVSHGK*