Scaffold JGI12713J13577_1000040

Overview

Basic Information

• Taxon OID: 3300001151
• Scaffold ID: JGI12713J13577_1000040
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41011
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (82.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002437	Metagenome / Metatranscriptome	559	Y
F021585	Metagenome / Metatranscriptome	218	Y
F105587	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12713J13577_10000402	F002437	GGAGG	MKISEIGIGRLLRVSSFLVIVGLVLEIVSLLWFHPLSFVLFAFLAASLIGLGILVYLVSLVFVAPPPAEDTPYRQP*
JGI12713J13577_100004030	F105587	AGCAGG	MSTAGSRSYPDATRLAEIVQKIRVLKLHLSGIIEHSRNSSVVSRLIMASGLLDIAIEEISKSVSEAKH*
JGI12713J13577_100004036	F021585	AGGTGG	MTEQSRTKRAPAEFRLHRQSSDNRRCQVVGERHILELISLGAPLPGILNKLCMMIDVRIGDVVSMVSLADEADNHFGSMTHSALRVGLEIFASNQILSPEGLFLGTLVIFGCDLRRPTMLEYQLIDRVTYLVALALQRPDPDDRLARLAVKPKGRMAGALEKPPFIN*