Scaffold JGI12631J13338_1000109

Overview

Basic Information

• Taxon OID: 3300001131
• Scaffold ID: JGI12631J13338_1000109
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26847
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052072	Metagenome / Metatranscriptome	143	Y
F062016	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12631J13338_100010928	F062016	GGAG	MKTFYKLATFVLTMTALTASVFAQEPAPAATVLANLTEGQGIIASGGNPSWDGLSELVLIPGASLMGASSTTTALYLGFTGGSEADIGNMVLYEVPRNGSTVEKITKVELGGTQSPSIVLTNTSVCPVQPVSVTNPCIVRLDTVKLALSPLYDYYFAVYFTLDTNNEKISGVGQTASAGALSGWSLYGDQTRIGAKGALPVNEDSDQPPFFLAYVTNE*
JGI12631J13338_100010929	F052072	GGAG	MKTIFKFATLTLMMFVVSVCGFSASKAENLERGIVGPVSSNVSWSGYSVVEQIPGAGLIPVTSTTTVFYLGFTAGTEADISGMVLYTTPRGGTTISAVTPVKLGGVSNPSIDLASTSVCPVAEISAFNPCIVRLDPTTITLSALNDYYLVVYFTASDSNDETLGVTAPSWGQTSLRGTYISGNETQLSVGGSIPSTLSFTNQPYLLMYVMTD*