Scaffold JGIcombinedJ13537_10047365

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGIcombinedJ13537_10047365

Scaffold JGIcombinedJ13537_10047365

Overview

Basic Information
Taxon OID	3300001097 Open in IMG/M
Scaffold ID	JGIcombinedJ13537_10047365 Open in IMG/M
Source Dataset Name	Saline microbial communities from Lake Vida, Antarctica (Lake Vida Brine Hole Two - Combined Assembly 2 samples, Mar 2013 Assem)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1101
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location
Location Name	Lake Vida, Antarctica
Coordinates	Lat. (^o)	-77.38861	Long. (^o)	161.931111	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009733	Metagenome	313	N
F017930	Metagenome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
JGIcombinedJ13537_100473651	F009733	GGAGG	VSEIDKELHVDTVEAEPVKKKPTTTRSPKPTTETERARAIVRAK
JGIcombinedJ13537_100473652	F017930	GGAG	MIDITLALAHLKPNDEWELNGDDYAGLTWLSDTPKPTEQEIADAYPLAVKSVAAKEKARVKALSDARAFALSLGFTEAMLAVMYTQLTEASSE*

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