Scaffold JGIcombinedJ13537_10018136

Overview

Basic Information

• Taxon OID: 3300001097
• Scaffold ID: JGIcombinedJ13537_10018136
• Source Dataset Name: Saline microbial communities from Lake Vida, Antarctica (Lake Vida Brine Hole Two - Combined Assembly 2 samples, Mar 2013 Assem)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2182
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location

• Location Name: Lake Vida, Antarctica
• Coordinates
  • Lat. (^o): -77.38861
  • Long. (^o): 161.931111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009733	Metagenome	313	N
F010818	Metagenome / Metatranscriptome	298	Y
F017930	Metagenome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
JGIcombinedJ13537_100181363	F010818	AGG	VDFGDVVGLVATSLAALAIMGTGLVWLIRNVVRDEIKKATVTIQPGFRNGGESLADVAAKVDLISAKLGL*
JGIcombinedJ13537_100181364	F009733	AGGAG	VSEIDQELHVDTVEPEQVKKKPATSRSPKLTNETERARAIVRAKLKG*
JGIcombinedJ13537_100181365	F017930	GGAG	MIDIAFTLTHSYPDAEWTIDGDDYTGLTWLSDTPKPTEQEITDAYPLAVESLAAKEKARLKAISEARDFALSLGFTPAMLAVMYPQLEEPLSE*