NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGIcombinedJ13537_10018136

Scaffold JGIcombinedJ13537_10018136


Overview

Basic Information
Taxon OID3300001097 Open in IMG/M
Scaffold IDJGIcombinedJ13537_10018136 Open in IMG/M
Source Dataset NameSaline microbial communities from Lake Vida, Antarctica (Lake Vida Brine Hole Two - Combined Assembly 2 samples, Mar 2013 Assem)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2182
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location
Location NameLake Vida, Antarctica
CoordinatesLat. (o)-77.38861Long. (o)161.931111Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009733Metagenome313N
F010818Metagenome / Metatranscriptome298Y
F017930Metagenome238Y

Sequences

Protein IDFamilyRBSSequence
JGIcombinedJ13537_100181363F010818AGGVDFGDVVGLVATSLAALAIMGTGLVWLIRNVVRDEIKKATVTIQPGFRNGGESLADVAAKVDLISAKLGL*
JGIcombinedJ13537_100181364F009733AGGAGVSEIDQELHVDTVEPEQVKKKPATSRSPKLTNETERARAIVRAKLKG*
JGIcombinedJ13537_100181365F017930GGAGMIDIAFTLTHSYPDAEWTIDGDDYTGLTWLSDTPKPTEQEITDAYPLAVESLAAKEKARLKAISEARDFALSLGFTPAMLAVMYPQLEEPLSE*

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