Scaffold JGIcombinedJ13537_10007322

Overview

Basic Information

• Taxon OID: 3300001097
• Scaffold ID: JGIcombinedJ13537_10007322
• Source Dataset Name: Saline microbial communities from Lake Vida, Antarctica (Lake Vida Brine Hole Two - Combined Assembly 2 samples, Mar 2013 Assem)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3865
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location

• Location Name: Lake Vida, Antarctica
• Coordinates
  • Lat. (^o): -77.38861
  • Long. (^o): 161.931111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006056	Metagenome	382	N
F009733	Metagenome	313	N
F017930	Metagenome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
JGIcombinedJ13537_100073222	F009733	AGGAG	VSEIDQELHVDTVEVEPPKKKPTSSKHPKVADETERARAIVRAKLKG*
JGIcombinedJ13537_100073223	F017930	GGAG	MIDITLALAHLKPNDEWELNGDDYTGLTWISDSPKPTEQEITDAYPLAVESLAAKEKARLKAISEARDFALSLGFTPAMLAVMYPQLEEPLSE*
JGIcombinedJ13537_100073225	F006056	N/A	MTLQITLNGSVIDVDLFEFNVTIAHGRSDVTSSPTASNTQIVLRGDTGPLLELADTVAISFDGVPRFTGAISDLNVSFISTTTPTAITTITAMGNLAKLGYTDVGASGYIEQTARQRVETILDATGLTYFNAGDPDITLYAILAADAQPSTALDAISRIAQGTGATFYDDPQGRIIFEDYGNRGATTFIGLWSNQVGTWSGAAGTWGSYPLVPPIYDLTAPGVVFAPTWAKTLTPLINDVTVTYGPDLSVTQTDSASITQYGRREYRLETEIKSISDATDRAAGIMTAQANGLWNLGQISVLVDQLNPADTEQLLDLVSGSRVTVRGLPASGPYPDFNGIVEGWTDSYNNGQHIMTLSISDPRFSLEVLQWGQVAPAFTWGNVGAGAQWFEIVTQSDLVRT*