Scaffold JGIcombinedJ13537_10005764

Overview

Basic Information

• Taxon OID: 3300001097
• Scaffold ID: JGIcombinedJ13537_10005764
• Source Dataset Name: Saline microbial communities from Lake Vida, Antarctica (Lake Vida Brine Hole Two - Combined Assembly 2 samples, Mar 2013 Assem)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4481
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location

• Location Name: Lake Vida, Antarctica
• Coordinates
  • Lat. (^o): -77.38861
  • Long. (^o): 161.931111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006056	Metagenome	382	N
F038569	Metagenome	165	N

Sequences

Protein ID	Family	RBS	Sequence
JGIcombinedJ13537_100057643	F038569	GGAGG	VKSIKNCMWTRHPKRWSLRKSQHRQSISKWPMKPNGPGLLSEPNSKGKAVDFADVVGLVATSLAALAIMGTGLVWLIRNVVRDEIKKATITIQPGFRNGGESLADVAAKVDLISAKLGL*
JGIcombinedJ13537_100057646	F006056	N/A	MTLQITLAGSVIDLDLFEFNVTIAHGRSDVTSSPTASNTQIVLRGDTGPLLELADTVAISFDGVARFTGAISDLDVSFISTTTPTAITTITAMGNLAKLGYTDVGASGYIEQSARQRVTGILDATGLDYLNAGDPDITLYEIAEIDAQPSTALDALSRIAQGTGATYYDDPQGRIIFEDYGNRGSTTFPGIWANQVGTWLDAEGTWADYPLFPTSFNLEAPGVIFAPTWAKTLTPLINDVTVTYGPDLSVTQTDSASIIQYGRREYRLDTEIKTISDATERAAGIMTAQANGLWNLGQISVLVDQLNPADTDKLLDLVSGSLVTVRGLPASGPYPDFNGIVEGWTDSYNNGQHIMTLSISDPRFSLQVLQWGQVAPAFTWSQVGPGAQWFEIITQSDLVRL*