Scaffold JGI12709J13192_1000004

Overview

Basic Information

• Taxon OID: 3300001086
• Scaffold ID: JGI12709J13192_1000004
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36520
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (52.63%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000443	Metagenome / Metatranscriptome	1132	Y
F005160	Metagenome / Metatranscriptome	410	Y
F023082	Metagenome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12709J13192_100000415	F023082	N/A	MAVLIDARRPVDVAREVARLVEAGQREFTLRRIDHGGMLDLERLGAARYVAGLESAVELEEETPAAVAAAR*
JGI12709J13192_100000429	F000443	GAG	MSTPSGGFAAANLSWSKVDVLTAFQRLTAEIQVRGGRLGQTINDPEPLFHLRNVSAEPLVPGAVPLSGVPEGLFNKAHIGGIRTIEPEPPPPDQAPDMIRRYVMYQAVSFMVSGAAEFPKVTEVSMHTEILMKNHFFQILDATVTIFGVAGKSWTQPSIWVNRDQMLGLFLG*
JGI12709J13192_100000432	F005160	GGA	MPHASAMLRMVAFAVAAGLAMAGVQPLVAAMNGSIEMRWAFGLTAPAVITAALVFGAVKISDRGDVVQPPWYSAWLLMPGSFLLAGAGAMCIFGALVQFSLIPWTLWVLLITGGLLWMAAMALVRSHSH*