Scaffold JGI10216J12902_105732287

Overview

Basic Information

• Taxon OID: 3300000956
• Scaffold ID: JGI10216J12902_105732287
• Source Dataset Name: Soil microbial communities from Great Prairies - Kansas, Native Prairie soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5529
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location

• Location Name: Kansas, USA
• Coordinates
  • Lat. (^o): 39.214012
  • Long. (^o): -96.585283

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011310	Metagenome / Metatranscriptome	292	Y
F073730	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI10216J12902_1057322873	F073730	AGGAG	MRSCRLCLLWTSVLMGTTLLLAGCAYNYDAVVQLLSPPEQAEFAIYRNVMTGTQKRTYLAKTTAAERTAYLNEIGLAQRFQQLDPVDREIVRSGAPRVGMSAEALLFVWGDPADTAGDARHYSRWHYLGSSLGRSTSYHPWESSNRVEVYLANGKVLGWVDTLPIGDHGGECQGQGC*
JGI10216J12902_1057322874	F011310	AGAAG	MRDLRPFVRWVVVLMGSIMTLSGCTYAAIHKLSLDEQAEFYVYRKVMTPSQERVYLAKATAAERTAYLSEIGLAQRFQALDPSDREAVMGGIPRVGMSAEALLFLWGEPYYTSGDASRYAHWYYLGSSLGLANYGNQYNYSGNRVDVYLVAGQVTGWVDYIPSDEPRKRRIP*