NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI1027J12803_107890821

Scaffold JGI1027J12803_107890821


Overview

Basic Information
Taxon OID3300000955 Open in IMG/M
Scaffold IDJGI1027J12803_107890821 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1584
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: National Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011867Metagenome / Metatranscriptome286Y
F056800Metagenome137Y
F075170Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
JGI1027J12803_1078908211F075170GGGGGMDVKDISPESIARAVNGTVERDGSILCHCPIHEASGRHTPSLALTITDTPRILFHCRSQNCDAKHFQVIRDHLVKCGLPRSHVGGNRADKEDRYTYQHPDGTYAWTKTRFVTKSGKKRFR
JGI1027J12803_1078908212F011867AGGAGMHLPMLKSTVPASLVDGQSIEDFIRNSTQNLQRMSAATGGSGVAGAVYLGFDGTSGVWKLNREVVDAKSLGRILVPQHGLFEGYIEWANSSPLQKIQRQLLGVHYDEMMSEQLLPKPLSPNAYRKETDGPSYMLGFMLDDGANLVFEHSSKGAKKALSALATTATQALAAFGEIVHPVIELGSSSYENSHGRTIYDPKLNVIGYVTDKRAQEADVISDDDIITRPAASRARLRRETKE
JGI1027J12803_1078908213F056800N/AIDRLIAARQRAVEAEGEVARARAEVEAEIIATLTNSGASKIKRNGYAVQLKTPKDGLAVLEIRSA*
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