NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI1027J12803_101312605

Scaffold JGI1027J12803_101312605


Overview

Basic Information
Taxon OID3300000955 Open in IMG/M
Scaffold IDJGI1027J12803_101312605 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1039
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: National Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003260Metagenome / Metatranscriptome497Y

Sequences

Protein IDFamilyRBSSequence
JGI1027J12803_1013126052F003260N/ALAPDSLNPVLSSGIDTDTPHFSLPCSPYNEFMQRSLGLLGVCLLFLGGCKKQPQMDYTALDQSGMWSSNIDQLKAQNVTPAEVSQLAKLKQAGASDDLCVALFKAARDHRHDFSSGDSAVNLSRAGYSDQQILEMAHSDQIDILSGDAVMLKLIGLSNSTVQAVMSRRMQGLPTLTSEQIGRLKNTAMPEKQILDVINQGLSNDQAEALITKREALRNHSHTDFVRVRGRKPR*
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