Scaffold JGI11615J12901_13831695

Overview

Basic Information

• Taxon OID: 3300000953
• Scaffold ID: JGI11615J12901_13831695
• Source Dataset Name: Soil microbial communities from Great Prairies - Kansas Corn soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 847
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location

• Location Name: Kansas, USA
• Coordinates
  • Lat. (^o): 39.211666
  • Long. (^o): -96.594768

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006533	Metagenome / Metatranscriptome	371	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI11615J12901_138316951	F006533	AGGA	MSSPSVSYAESVLSHLEKVQQLPVEVQIGIARRVESCIKIARAAKNEAIVANIASSAMEEQAKAIGHGTMDPQWAAPAIAEAWCYATMSLTKGYLDRLHAQAIIGAIEAFTSSRLSS*