Scaffold BBAY92_12242913

Overview

Basic Information

• Taxon OID: 3300000947
• Scaffold ID: BBAY92_12242913
• Source Dataset Name: Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY92
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4044
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface → Macroalgal Surface Microbial Communities

Source Dataset Sampling Location

• Location Name: Botany Bay, Sydney, NSW, Australia
• Coordinates
  • Lat. (^o): -33.966629
  • Long. (^o): 151.166614

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028320	Metagenome / Metatranscriptome	192	N
F066583	Metagenome / Metatranscriptome	126	N
F096075	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
BBAY92_122429135	F028320	AGGA	MANQYRKVINITLFANSEGKATHGNSKWTPYKDGVPADIYLRKDARYSVKLFGNDDGSLGLAISEVVQGQYTDSISDGVSQPGMRTLAQSIDPPKQSPISALKDELDDEVPF*
BBAY92_122429136	F096075	GAG	MMKYHSKAYYSTQEATELMFGDTPSNRKRLLRLLQNGEVKGKKFGKRWFVYASEIEGELNEVQ*
BBAY92_122429137	F066583	AGGAG	MKYNKAGIDFENCYVCGTKLKQVSHKRNIQRRCKSCIYHGVGEMKPVVEESQQEEEEDWSVLDDPRAVNEKDYGRVFREPTQLHTGHSSLSELVGGSSNYNHIHGPSRDGVRYSNRKKDKKT*