Scaffold BBAY92_10210658

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold BBAY92_10210658

Scaffold BBAY92_10210658

Overview

Basic Information
Taxon OID	3300000947 Open in IMG/M
Scaffold ID	BBAY92_10210658 Open in IMG/M
Source Dataset Name	Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY92
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	505
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
unclassified Hyphomonas → Hyphomonas sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface → Macroalgal Surface Microbial Communities

Source Dataset Sampling Location
Location Name	Botany Bay, Sydney, NSW, Australia
Coordinates	Lat. (^o)	-33.966629	Long. (^o)	151.166614	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F084112	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
BBAY92_102106582	F084112	AGGAG	MQTYGSSGDVFNSNVTTENKIVKSGRTRAHGIVLNTTGTAGDFHLKDGGASGTVRFKYKTTGTASGASPLVINFPGPILFTTDLTVAFTTEHVTVCSVFYS*

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