Scaffold OpTDRAFT_10085251

Overview

Basic Information

• Taxon OID: 3300000928
• Scaffold ID: OpTDRAFT_10085251
• Source Dataset Name: Marine plume microbial communities from the Columbia River - 25 PSU
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2004
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River plume, coastal ocean
• Coordinates
  • Lat. (^o): 46.233
  • Long. (^o): -124.16
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004866	Metagenome	420	Y
F005243	Metagenome / Metatranscriptome	407	Y
F006666	Metagenome / Metatranscriptome	367	Y

Sequences

Protein ID	Family	RBS	Sequence
OpTDRAFT_100852511	F005243	N/A	MSNSKTNPNLQDTNPEMSKEEMAARREEITQFYKDNIPHLEIQADYETLLAAIEKARAERMQAQMFMAQQYAAQKGEGAPDPNTEEGKAFQEAMVKAMQGETA*
OpTDRAFT_100852513	F004866	GAG	MAIVNKVDLKHQVDINVSIKYQIVTYCFFNDTLISNSDLKFLTQLAKVQGIELTKFCEDAVNKGIFKSSQSARNAITKAEKKNLLIKKGHNKKTISLNPDINVQSNGLVLLDYKILGRESEES*
OpTDRAFT_100852514	F006666	N/A	VNPKSHREFKRGIADEVGVHPSVVDDFVSFYYAKVRQKLSSLAFPRINIDGLGTFYLRKNKLDKSIMKNKSLLGNIAKRTYNGFAKSEDIQNNIIQMEKAMTQLEQDIIKKKRFKNER*