Scaffold OpTDRAFT_10078711

Overview

Basic Information

• Taxon OID: 3300000928
• Scaffold ID: OpTDRAFT_10078711
• Source Dataset Name: Marine plume microbial communities from the Columbia River - 25 PSU
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2047
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River plume, coastal ocean
• Coordinates
  • Lat. (^o): 46.233
  • Long. (^o): -124.16
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050222	Metagenome / Metatranscriptome	145	Y
F057992	Metagenome / Metatranscriptome	135	N
F088518	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
OpTDRAFT_100787112	F050222	AGGAGG	MTPLITILLIHIGSNVYSVEYPSQMACGEALVVIAEATPPLGGRKTFAQCVRTYSPSASPRPVARGETE*
OpTDRAFT_100787116	F057992	AGGA	MTTATITITNRLPTDTGFALRQDDGSYSQVFVPSHIMRNAGGGMEVGHTYDVVLIENSEPLRATTPWRVIQMDVGPVGGQQPAPEKTAPKPAPSALIEDRIFEQLSASLYMTTGELTTALGASGTIVRDRLMAMFNRNQIVRADVHARPNLQRATMCLWALDIDAFISEGE*
OpTDRAFT_100787118	F088518	N/A	EDEIKFLQGAIQQVERMATSMLAEYGHGVRPSFVSADLADYGSRIDRYKAEIARLEAAQHG*