Scaffold OpTDRAFT_10018795

Overview

Basic Information

• Taxon OID: 3300000928
• Scaffold ID: OpTDRAFT_10018795
• Source Dataset Name: Marine plume microbial communities from the Columbia River - 25 PSU
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10809
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River plume, coastal ocean
• Coordinates
  • Lat. (^o): 46.233
  • Long. (^o): -124.16
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033250	Metagenome	178	N
F038464	Metagenome	166	N
F045425	Metagenome	153	N
F075427	Metagenome	119	N
F080627	Metagenome	115	N
F104043	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
OpTDRAFT_1001879512	F045425	N/A	MADGTPYSARWTGPTLITKSHDTTVTVDIEHGGSAPTVSAVTFSLYSPNGTAIVDGAAASESGGTLSYTVTAASMSSQAYAQGWAVKFSATIGGDVHDFYNDAAVCLARLYCPIGTTDLTNRYSRLAALQTTGASDLQKFVTDAWTELTARLYSEALPFWRMRTPSSLRPWLIAQAAVFALDDLALTLGDGGPYREEARRIEESLPRLYNKIRSLMDDNEDNNLDEVHQPASAVIQISSGRIGRYRS*
OpTDRAFT_1001879513	F080627	N/A	MNYATALTATIGRLNAAGLIECRSPNGLLGAGAPRGHRSVACLPAGDRKQRSRQAARVDGLRVTARFTVQLGHELKPGAGLEAPSQALQDLHSAQRYLIQPGTSLTTEAALTFGPVTTTRLQGGAYMIQAFELGVTFNLDMSTP*
OpTDRAFT_1001879515	F033250	GGAG	MDVKLTTTRQLSPVFDEGGELDLEALRPLLEQHAATMVEDARSGGGGWPVDTGISRAAWKAEIDVSPSQLFVSLINEARQRGRGYAVYIHRARSRRLVWTETQERFTLSLIPALQADIALQLAESMRG*
OpTDRAFT_1001879517	F038464	GAGG	MDTITLSPLHDLQIRKPASWTALVDLTLYWPTDIEDPRFRARLVRCSAAAIGLVLDDERLPLPSYRAESMDLVAYGVSVVEVLIPRRVQLAEILRAGREIADWLAGTLPSEQEVSQTADFTDAGASAT*
OpTDRAFT_1001879518	F075427	N/A	MCLRIDRLWGREPGWFLTLDRSVQAQLLAEHRLLTETPEQRKKSAAKAKRAEFDRRMRRIHG*
OpTDRAFT_100187959	F104043	GAG	MKTTRTLKGPKRQAPVTGFDPNLLPVNGKVRPAAPFVYVHYAGAWEFHNVQGWLPQLSKLVAMPGVNGVDERLDLRRAIQGAVSKGGAYINPKDRRLLLDGEEEDEALYFDYARFYDCTDGRKWWVTVGQEPTVTRSGRILWNADEASEVFAAFRAHLRDSNIIEPMHDLVFREKMDSQRARIDNLRGRAGMNPHLAGQLQQAEQQLVAMEAAHAKQVDLDLEQPTIKPRRKRSKT*