Basic Information | |
---|---|
Taxon OID | 3300000928 Open in IMG/M |
Scaffold ID | OpTDRAFT_10018795 Open in IMG/M |
Source Dataset Name | Marine plume microbial communities from the Columbia River - 25 PSU |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Maryland |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 10809 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (63.16%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Associated Families | 6 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Columbia River plume, coastal ocean | |||||||
Coordinates | Lat. (o) | 46.233 | Long. (o) | -124.16 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F033250 | Metagenome | 178 | N |
F038464 | Metagenome | 166 | N |
F045425 | Metagenome | 153 | N |
F075427 | Metagenome | 119 | N |
F080627 | Metagenome | 115 | N |
F104043 | Metagenome | 101 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
OpTDRAFT_1001879512 | F045425 | N/A | MADGTPYSARWTGPTLITKSHDTTVTVDIEHGGSAPTVSAVTFSLYSPNGTAIVDGAAASESGGTLSYTVTAASMSSQAYAQGWAVKFSATIGGDVHDFYNDAAVCLARLYCPIGTTDLTNRYSRLAALQTTGASDLQKFVTDAWTELTARLYSEALPFWRMRTPSSLRPWLIAQAAVFALDDLALTLGDGGPYREEARRIEESLPRLYNKIRSLMDDNEDNNLDEVHQPASAVIQISSGRIGRYRS* |
OpTDRAFT_1001879513 | F080627 | N/A | MNYATALTATIGRLNAAGLIECRSPNGLLGAGAPRGHRSVACLPAGDRKQRSRQAARVDGLRVTARFTVQLGHELKPGAGLEAPSQALQDLHSAQRYLIQPGTSLTTEAALTFGPVTTTRLQGGAYMIQAFELGVTFNLDMSTP* |
OpTDRAFT_1001879515 | F033250 | GGAG | MDVKLTTTRQLSPVFDEGGELDLEALRPLLEQHAATMVEDARSGGGGWPVDTGISRAAWKAEIDVSPSQLFVSLINEARQRGRGYAVYIHRARSRRLVWTETQERFTLSLIPALQADIALQLAESMRG* |
OpTDRAFT_1001879517 | F038464 | GAGG | MDTITLSPLHDLQIRKPASWTALVDLTLYWPTDIEDPRFRARLVRCSAAAIGLVLDDERLPLPSYRAESMDLVAYGVSVVEVLIPRRVQLAEILRAGREIADWLAGTLPSEQEVSQTADFTDAGASAT* |
OpTDRAFT_1001879518 | F075427 | N/A | MCLRIDRLWGREPGWFLTLDRSVQAQLLAEHRLLTETPEQRKKSAAKAKRAEFDRRMRRIHG* |
OpTDRAFT_100187959 | F104043 | GAG | MKTTRTLKGPKRQAPVTGFDPNLLPVNGKVRPAAPFVYVHYAGAWEFHNVQGWLPQLSKLVAMPGVNGVDERLDLRRAIQGAVSKGGAYINPKDRRLLLDGEEEDEALYFDYARFYDCTDGRKWWVTVGQEPTVTRSGRILWNADEASEVFAAFRAHLRDSNIIEPMHDLVFREKMDSQRARIDNLRGRAGMNPHLAGQLQQAEQQLVAMEAAHAKQVDLDLEQPTIKPRRKRSKT* |
⦗Top⦘ |