NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold OpTDRAFT_10018795

Scaffold OpTDRAFT_10018795


Overview

Basic Information
Taxon OID3300000928 Open in IMG/M
Scaffold IDOpTDRAFT_10018795 Open in IMG/M
Source Dataset NameMarine plume microbial communities from the Columbia River - 25 PSU
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Maryland
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10809
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (63.16%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location
Location NameColumbia River plume, coastal ocean
CoordinatesLat. (o)46.233Long. (o)-124.16Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033250Metagenome178N
F038464Metagenome166N
F045425Metagenome153N
F075427Metagenome119N
F080627Metagenome115N
F104043Metagenome101N

Sequences

Protein IDFamilyRBSSequence
OpTDRAFT_1001879512F045425N/AMADGTPYSARWTGPTLITKSHDTTVTVDIEHGGSAPTVSAVTFSLYSPNGTAIVDGAAASESGGTLSYTVTAASMSSQAYAQGWAVKFSATIGGDVHDFYNDAAVCLARLYCPIGTTDLTNRYSRLAALQTTGASDLQKFVTDAWTELTARLYSEALPFWRMRTPSSLRPWLIAQAAVFALDDLALTLGDGGPYREEARRIEESLPRLYNKIRSLMDDNEDNNLDEVHQPASAVIQISSGRIGRYRS*
OpTDRAFT_1001879513F080627N/AMNYATALTATIGRLNAAGLIECRSPNGLLGAGAPRGHRSVACLPAGDRKQRSRQAARVDGLRVTARFTVQLGHELKPGAGLEAPSQALQDLHSAQRYLIQPGTSLTTEAALTFGPVTTTRLQGGAYMIQAFELGVTFNLDMSTP*
OpTDRAFT_1001879515F033250GGAGMDVKLTTTRQLSPVFDEGGELDLEALRPLLEQHAATMVEDARSGGGGWPVDTGISRAAWKAEIDVSPSQLFVSLINEARQRGRGYAVYIHRARSRRLVWTETQERFTLSLIPALQADIALQLAESMRG*
OpTDRAFT_1001879517F038464GAGGMDTITLSPLHDLQIRKPASWTALVDLTLYWPTDIEDPRFRARLVRCSAAAIGLVLDDERLPLPSYRAESMDLVAYGVSVVEVLIPRRVQLAEILRAGREIADWLAGTLPSEQEVSQTADFTDAGASAT*
OpTDRAFT_1001879518F075427N/AMCLRIDRLWGREPGWFLTLDRSVQAQLLAEHRLLTETPEQRKKSAAKAKRAEFDRRMRRIHG*
OpTDRAFT_100187959F104043GAGMKTTRTLKGPKRQAPVTGFDPNLLPVNGKVRPAAPFVYVHYAGAWEFHNVQGWLPQLSKLVAMPGVNGVDERLDLRRAIQGAVSKGGAYINPKDRRLLLDGEEEDEALYFDYARFYDCTDGRKWWVTVGQEPTVTRSGRILWNADEASEVFAAFRAHLRDSNIIEPMHDLVFREKMDSQRARIDNLRGRAGMNPHLAGQLQQAEQQLVAMEAAHAKQVDLDLEQPTIKPRRKRSKT*

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