Basic Information | |
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Taxon OID | 3300000928 Open in IMG/M |
Scaffold ID | OpTDRAFT_10010739 Open in IMG/M |
Source Dataset Name | Marine plume microbial communities from the Columbia River - 25 PSU |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Maryland |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12401 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients |
Source Dataset Sampling Location | ||||||||
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Location Name | Columbia River plume, coastal ocean | |||||||
Coordinates | Lat. (o) | 46.233 | Long. (o) | -124.16 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F019396 | Metagenome | 230 | Y |
F026261 | Metagenome / Metatranscriptome | 198 | Y |
F084081 | Metagenome / Metatranscriptome | 112 | Y |
Protein ID | Family | RBS | Sequence |
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OpTDRAFT_100107391 | F026261 | AGGA | LAKLIGTTDGIIDWDPIVDLCAKCTTGDYNSVKSVVERSEGNWRENPELLGSYHDVINTWDQAGYNLEEIEWWDYYPDTHFDIDIQNKFAKIIDAEPLRVFVSDVRPGTNAPYHWDVEDKEQEWLEQGELKRWVCFMDKPRWGTV |
OpTDRAFT_100107392 | F019396 | AGGA | MDITNWKPYLKLDTEGNPCMAQQTYEPLVSPDGKTFCKNYEFPNEYQYRDEKDRPLYTDEVCDWFFDNEVKYLLEFEDKPYAPEDIDIDFHNRRIFLKWHSKSCNQIMYAENKSWPQGEWRDQIKDIILDQYNEGIYKLTMYPHCHYIDSQGQMRAIDWYGCVPIDAPYIAEKYMQGIIHETAQFRLEETGKAVDSVLNLETMFKRSLSTHVLWGDQDMSYIYKQIFK* |
OpTDRAFT_100107396 | F084081 | N/A | LPPELKQQVITKLEAMKETVLTYSLVQENELLKKVTLQQIQDNINFLQAKCMYKSHWQDCIEFNKRLDTTRGQDFLAANPEFTPYV* |
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