Scaffold OpTDRAFT_10010309

Overview

Basic Information

• Taxon OID: 3300000928
• Scaffold ID: OpTDRAFT_10010309
• Source Dataset Name: Marine plume microbial communities from the Columbia River - 25 PSU
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8236
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (22.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River plume, coastal ocean
• Coordinates
  • Lat. (^o): 46.233
  • Long. (^o): -124.16
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036007	Metagenome	171	Y
F043374	Metagenome	156	N
F073493	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
OpTDRAFT_1001030912	F043374	N/A	MFPSDPTFNELHIREKQMLLGAILIWLNDCAHYAETTQEQNDIINKIIDLVEVDRVMNYFIDYERSVNRFLSEARLENAKLKLENQEMKQTIDKLQNSLDNAAENL*
OpTDRAFT_100103095	F073493	N/A	MTKADKRKHWAKIENGEIPDDYQNPFLSHFGFMDYPLDEYQERTRQKLKRYHGYE*
OpTDRAFT_100103097	F036007	N/A	MKAADKPFSKKKSSSLKSTNLTLILPNDAVIKVEVGKVPSLNAFYASKHWIMRKKAKDKFKAEILEQLNQYDKIQLAQVTVRLETNLGYDIDNCIMAVKFGMDAFKEWGGIADDTKKYFPKLTIIYNNQLPKNTSQLYFTGLLVE*