Scaffold OpTDRAFT_10001597

Overview

Basic Information

• Taxon OID: 3300000928
• Scaffold ID: OpTDRAFT_10001597
• Source Dataset Name: Marine plume microbial communities from the Columbia River - 25 PSU
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10962
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River plume, coastal ocean
• Coordinates
  • Lat. (^o): 46.233
  • Long. (^o): -124.16
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004712	Metagenome / Metatranscriptome	427	Y
F042922	Metagenome / Metatranscriptome	157	N
F074945	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
OpTDRAFT_1000159710	F074945	N/A	QVEPSAAAFAHLGDCAKLIVQDIDIAGLKSSGNAETQNVLGANAGAEVGGITEELFDITSTAITSGTMLMAPTQVFPSPESFDAANQRAFAEIEAVKGSISTGLLAYLXXXTGLLAYLSEFFQVLPYSETKCRRDTGYIIDAISHDIQYGGNAATVQTAGMYFENAVNTGLQIEQRMGTRDAFLHLAKIVEHVVGGKSITTTXIVEHVVGAKSITTTLFPRLKTYYTGDILTQYEYWNGIPSYSNTAQDMAVVGANPDTCIAARKLTEIVANAVDDNIETRNTIPERIDVLQTWMSDSFITSKETVERRSDILAESIITYLSNTWNALSFPDAKCRRDIGYIIDSISHDIQHDTNFATLQSAGIYFENGVSVLPVDTKVQYADILSLLGDVVEQVVQEIAVTNASLYTLTPQNLLGTAATATEGTAVHDLVGLIENVVRKDDTDELARPVSTATWIDAELTAAANKIVDNTEELASDVTQFINSSFKVLDYSKAKCRRDTGYLLDAFSFDLNFGGNTASRWNADFYFWNSIYRLPEDQRNPTAKSYRQLGKICKDIVLGEYAGQSVLGEVGTSIESTKVEGLANIFYETQLYNDTKYLPVLIEPDYAYSSVTFTDAQNIIGQRREGLQKDTVRHVNSAYNFIDVNLTRRDARNLLTAVYNDFAYDKFNPGVAAPTYADNGSQNAVRTFTASFFNYDGTHVFPVFNPSDSTLGLKYKGSVNSVADLSTITGQKPKWSYIVATDYATNFYAGDIYYWNGSAWVGAGTNNTDLLDAFAGAWTRMKTYINTNLSPDLEHENMVTGLFDDCLLDNILRPETLIFGSLVESIAHQFNGASAGVNRNALPLNFRNLGQAISAIASVLNEDGGRIRWSGADELNNQYFARGLRINGRTGRIEGRPFTSSVRKLARRASNSRAVV*
OpTDRAFT_100015973	F042922	AGG	MASRANIYIDKGLDFRTEINLFNDAGEEYDDATISVYSFYSSIKKVYSSAAAANFTVEVANNDITLVLTDQQTDLLTPGKYQYDVVMQKQTGERTKIVEGLAIVVDTITEVS*
OpTDRAFT_100015979	F004712	GGA	MSDPILVTTSQAPDAKPIAVNKILTTTPAVIVDVPQYRVPELVFGGSTTVEPGVGEIISPLILCNVTASTVTVNVRVFRWADAGGAGLYYFILKNFPVPAGDTIPIPLNGQFLGTGDKLEVDCSVDFAIHSTLSFTLGQAEEDDVV*