Basic Information | |
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Taxon OID | 3300000928 Open in IMG/M |
Scaffold ID | OpTDRAFT_10001597 Open in IMG/M |
Source Dataset Name | Marine plume microbial communities from the Columbia River - 25 PSU |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Maryland |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10962 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients |
Source Dataset Sampling Location | ||||||||
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Location Name | Columbia River plume, coastal ocean | |||||||
Coordinates | Lat. (o) | 46.233 | Long. (o) | -124.16 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004712 | Metagenome / Metatranscriptome | 427 | Y |
F042922 | Metagenome / Metatranscriptome | 157 | N |
F074945 | Metagenome / Metatranscriptome | 119 | Y |
Protein ID | Family | RBS | Sequence |
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OpTDRAFT_1000159710 | F074945 | N/A | QVEPSAAAFAHLGDCAKLIVQDIDIAGLKSSGNAETQNVLGANAGAEVGGITEELFDITSTAITSGTMLMAPTQVFPSPESFDAANQRAFAEIEAVKGSISTGLLAYLXXXTGLLAYLSEFFQVLPYSETKCRRDTGYIIDAISHDIQYGGNAATVQTAGMYFENAVNTGLQIEQRMGTRDAFLHLAKIVEHVVGGKSITTTXIVEHVVGAKSITTTLFPRLKTYYTGDILTQYEYWNGIPSYSNTAQDMAVVGANPDTCIAARKLTEIVANAVDDNIETRNTIPERIDVLQTWMSDSFITSKETVERRSDILAESIITYLSNTWNALSFPDAKCRRDIGYIIDSISHDIQHDTNFATLQSAGIYFENGVSVLPVDTKVQYADILSLLGDVVEQVVQEIAVTNASLYTLTPQNLLGTAATATEGTAVHDLVGLIENVVRKDDTDELARPVSTATWIDAELTAAANKIVDNTEELASDVTQFINSSFKVLDYSKAKCRRDTGYLLDAFSFDLNFGGNTASRWNADFYFWNSIYRLPEDQRNPTAKSYRQLGKICKDIVLGEYAGQSVLGEVGTSIESTKVEGLANIFYETQLYNDTKYLPVLIEPDYAYSSVTFTDAQNIIGQRREGLQKDTVRHVNSAYNFIDVNLTRRDARNLLTAVYNDFAYDKFNPGVAAPTYADNGSQNAVRTFTASFFNYDGTHVFPVFNPSDSTLGLKYKGSVNSVADLSTITGQKPKWSYIVATDYATNFYAGDIYYWNGSAWVGAGTNNTDLLDAFAGAWTRMKTYINTNLSPDLEHENMVTGLFDDCLLDNILRPETLIFGSLVESIAHQFNGASAGVNRNALPLNFRNLGQAISAIASVLNEDGGRIRWSGADELNNQYFARGLRINGRTGRIEGRPFTSSVRKLARRASNSRAVV* |
OpTDRAFT_100015973 | F042922 | AGG | MASRANIYIDKGLDFRTEINLFNDAGEEYDDATISVYSFYSSIKKVYSSAAAANFTVEVANNDITLVLTDQQTDLLTPGKYQYDVVMQKQTGERTKIVEGLAIVVDTITEVS* |
OpTDRAFT_100015979 | F004712 | GGA | MSDPILVTTSQAPDAKPIAVNKILTTTPAVIVDVPQYRVPELVFGGSTTVEPGVGEIISPLILCNVTASTVTVNVRVFRWADAGGAGLYYFILKNFPVPAGDTIPIPLNGQFLGTGDKLEVDCSVDFAIHSTLSFTLGQAEEDDVV* |
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