Scaffold JGI10214J12806_11907120

Overview

Basic Information

• Taxon OID: 3300000891
• Scaffold ID: JGI10214J12806_11907120
• Source Dataset Name: Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 792
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location

• Location Name: Iowa, USA
• Coordinates
  • Lat. (^o): 43.303333
  • Long. (^o): -89.334167

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051762	Metagenome	143	Y
F080380	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI10214J12806_119071201	F051762	N/A	MLIYTQTKFVTASAILLVSASALAETPEALVKQGLQRNPELNFFIAEIAAAKGAVRTAGTVRNP
JGI10214J12806_119071202	F080380	GGA	MNSMRFPGTPRLFALTGLIALCAFAGDVVADSIADLRGDHCVCQSSQSDSHHEKTPCSHCSCAVHNGTVITSTVAVDISGAFRGFILFSIGEQSAPDGLPTAIDHPPQLA*