Scaffold JGI10214J12806_11861556

Overview

Basic Information

• Taxon OID: 3300000891
• Scaffold ID: JGI10214J12806_11861556
• Source Dataset Name: Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 678
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas vasicola (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location

• Location Name: Iowa, USA
• Coordinates
  • Lat. (^o): 43.303333
  • Long. (^o): -89.334167

Associated Families

Family	Category	Number of Sequences	3D Structure?
F083871	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
JGI10214J12806_118615561	F083871	GGAGG	MGRAHRSRPHQLGKKLQLIRIRLGLTQSELIKRLAVKGEVLYPSSISLFERGGREPSLLVLLAYSNLSGWTINELVDDKMDLSDAKILK*