Scaffold JGI10214J12806_10517129

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI10214J12806_10517129

Scaffold JGI10214J12806_10517129

Overview

Basic Information
Taxon OID	3300000891 Open in IMG/M
Scaffold ID	JGI10214J12806_10517129 Open in IMG/M
Source Dataset Name	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1814
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location Name	Iowa, USA
Coordinates	Lat. (^o)	43.303333	Long. (^o)	-89.334167	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032945	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI10214J12806_105171291	F032945	AGGGGG	MRTAIKWLVSAALVVAAAPATAQSPLNFNDLVGVWNLMYEDGQTGTFTFSKNNDGTPKVVVSTMAGGESVAKEVVIKGDTITFTRDIAVQGLSGSVTYTAKLVDGALKGTGDVKLGDVGTPTPFTAKKAK*

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