Scaffold JGI11643J12802_10062499

Overview

Basic Information

• Taxon OID: 3300000890
• Scaffold ID: JGI11643J12802_10062499
• Source Dataset Name: Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1712
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Depth (m): .1016

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000805	Metagenome / Metatranscriptome	883	Y
F001079	Metagenome / Metatranscriptome	785	Y
F021376	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI11643J12802_100624991	F021376	AGG	VYLKHLSSLQFLTYISFFAVVMAALFKFVPGRAPPVRETPYPEDELHAHDPKAAKYFLAGGFFLVLGSLHMAV
JGI11643J12802_100624993	F001079	AGAAG	MAVELTPSAPSALPYVSWSSWGMAVVPAADWPLVFGSMQALKGHVQEYPGCQKLEAFVEPEGPDYRIHCYTTWDTPEQLEAFLDRGYTFERMLADVGLQAEPPRLMEKIF*
JGI11643J12802_100624994	F000805	AGGAG	MGMPSGESPEHAQQYYQYLQGHKETMQHADTWHVQWIQLAWLWGFVIALVLVLLLWIWQYRSTRQKAGPYPVDSFGGYTTELAGPATLFFLLLTVGLTGWAVVLIVGHLVWGQKF*