Scaffold FwDRAFT_10111379

Overview

Basic Information

• Taxon OID: 3300000882
• Scaffold ID: FwDRAFT_10111379
• Source Dataset Name: Freshwater microbial communities from the Columbia River
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8436
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River freshwater tidal region
• Coordinates
  • Lat. (^o): 46.18
  • Long. (^o): -123.18
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055561	Metagenome	138	N
F069854	Metagenome	123	N
F095170	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
FwDRAFT_1011137910	F095170	N/A	MAKVNGSILFVTVGLNRVAKSTSYELSAEMGQLDKISNESGFFADHISRLASWSLSSESLYIQDGFSFGDLFNAYVNRERIYLSAGQDDNLTFIGLATIESLSQSAPMENVATISASFKGVGGLYPTILPAERFIIDELFEIIIDQDGNFLVYT*
FwDRAFT_1011137913	F055561	AGG	LHYAIGELGLEPNSFYFMSFAEYQSIAYGYQIRQSKEENLFRTIWVQLNNVNVTKKGDLIRKPDKFWRIPLLDAKPIKIPTAEEKAKAYEIGLKWQNLKFEEEANFDTITNKIQ*
FwDRAFT_101113799	F069854	N/A	MRNIKPFIRKAYWLALNNTINYKGLMVPCYDTFAPDTAQFPYILIGNQTQEDDKDNTDYNYITTITLDVVTAKVAPYGRLDADLIADSILQIVCLYPENYLALQVGKIVTAKLIQQASLSSITDTNIVHREIMTIENWVNG*