Scaffold FwDRAFT_10032866

Overview

Basic Information

• Taxon OID: 3300000882
• Scaffold ID: FwDRAFT_10032866
• Source Dataset Name: Freshwater microbial communities from the Columbia River
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11678
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River freshwater tidal region
• Coordinates
  • Lat. (^o): 46.18
  • Long. (^o): -123.18
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023065	Metagenome / Metatranscriptome	211	Y
F036563	Metagenome / Metatranscriptome	169	Y
F085388	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
FwDRAFT_100328664	F023065	N/A	MYTNSELIGRVKSANKFVSDDDLISDRYIYGLLKTKAATLLRREINLRRLLTSDNVYQAYECVHLIEAPGSECDLGCPIRRTKHKLPNIDEGLYSYFIQGVFNTSNSEELFPTTIRDYINHTRLRFKTPKKYYTIRNGYLYVLDPDVECVNMYAYFTESIEDLDGTDCVSMYDKQFKFPGYLTDALIEMCTQSLMNYQKIPYDLEDNNRDEPN*
FwDRAFT_100328666	F085388	N/A	MTKCCPTNNCVEIVPSGCVKYTGTPTPGGLIDSFDNCDPYLNDLLKLLDDKVVNIDTRVGLNKTAFDNANTACGTTSVISTVGLTVADDKYYSSEVVLKLVGVICELRSRMNYLSAGNINTNKGNIHWLDLPLDGKLDLQCLTSYCNPPAPILTLKDLLNAIIDKICP*
FwDRAFT_100328667	F036563	N/A	MNVQLNIEALKAKDCAYLSILDTSFYPVAPDSAEISISLPGFDNPYNFDFVVSEVNVFTAYSFGLTVEETDSFTPLPDGVYKLEFVPCPNVGTCTRYHLRTCKIDCRLAVQWAKYVDCCDDEKMLYYLDKIEFLLKGAEAHADLCNPAKATELYKKADDLLRRFELDC*