Scaffold FwDRAFT_10023811

Overview

Basic Information

• Taxon OID: 3300000882
• Scaffold ID: FwDRAFT_10023811
• Source Dataset Name: Freshwater microbial communities from the Columbia River
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1657
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River freshwater tidal region
• Coordinates
  • Lat. (^o): 46.18
  • Long. (^o): -123.18
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001019	Metagenome / Metatranscriptome	804	Y

Sequences

Protein ID	Family	RBS	Sequence
FwDRAFT_100238112	F001019	AGG	MTYEPSLEILEMEYSCSPGGVDTFEVYDKSDIPLSVPIYETESLTDAVLYCYNLGKDFTVKTLAEWNERELAYEASR*
FwDRAFT_100238114	F000441	GAGG	MKMSDVYINDQLNKAQQLLWGGSETENIEAHNIISKLISDRMEQVDL*
FwDRAFT_100238116	F000852	GGA	MATKREYLKSQGITVGVRGRFSGAAKVALAEAVAKGVTFTAEVPSNKAK*