Scaffold FwDRAFT_10016088

Overview

Basic Information

• Taxon OID: 3300000882
• Scaffold ID: FwDRAFT_10016088
• Source Dataset Name: Freshwater microbial communities from the Columbia River
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42023
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (74.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River freshwater tidal region
• Coordinates
  • Lat. (^o): 46.18
  • Long. (^o): -123.18
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032097	Metagenome	181	Y
F032881	Metagenome / Metatranscriptome	179	Y
F051925	Metagenome	143	Y
F078715	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
FwDRAFT_1001608811	F032097	AGGAGG	MEFNLHHEVDKGPLVRWFANQAMNISGWLAKTSAPYADMYTAVWDDYEEDDLSVPHNQMGIFDTLEPLPQFDHLTQELI*
FwDRAFT_1001608815	F051925	AGGA	MSKGFQYDFFAEEWSHVCGACKTKLYAPTKKHIEGNFWIHTHSNDCLGGW*
FwDRAFT_1001608818	F078715	N/A	MYKKFLASIFSVLLVFAQATPASASDSIRYKSTDIQKIQRGKWTTLKFNGGKTEIQGNGKRSLFCYQAGIDTEGKKRPSYIKLRITRIVPGPNDPSATNTYFFTEKPGSEFVASNCWNIVTKYPVVVQIKITGGSKTYNSDIRQFKMWTPNGEYPQDFSDFIPETTIN*
FwDRAFT_1001608849	F032881	AGGAG	MSTTLELVVQELQNRIGQITSQYETQMAILKAQATEAIQAKDAEIASLKENKETSN*