Scaffold FwDRAFT_10006994

Overview

Basic Information

• Taxon OID: 3300000882
• Scaffold ID: FwDRAFT_10006994
• Source Dataset Name: Freshwater microbial communities from the Columbia River
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4053
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River freshwater tidal region
• Coordinates
  • Lat. (^o): 46.18
  • Long. (^o): -123.18
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F022857	Metagenome	212	Y
F053230	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
FwDRAFT_100069941	F053230	N/A	MFETIASFVLPTLKDILWAACAALLAYALNKIQSHFQGI*
FwDRAFT_100069942	F001018	GGA	MSQITQVKLNSLNVLKLYEHYGALERSLPLLTPESQELAKAELEQCAQIRSEKIDRIYYAIAAHEDALERIKKESELMATAKKHHESQIKSLKGLISWLRRALPVDSNKITGRNYQFTLIKKKDLTVEVSSSIEDWDQKQQEQFCILQETTIMKRIVVRSIGGELLEEKTTPSTKTELLPNLDAIRNAYQTSQHLPNGVKVVQEYSIRTKRIYSEPKVDLDASEYFGELLPEVGSSD*
FwDRAFT_100069945	F022857	N/A	MEPVYTPKLTISFAVDLEVEYDPFKGRTHEQVAAALQETLDNLLFETSPKVVGVFTSITAIESND*