Scaffold JGI12271J12027_1112911

Overview

Basic Information

• Taxon OID: 3300000831
• Scaffold ID: JGI12271J12027_1112911
• Source Dataset Name: Soil microbial communities from Moab, Utah, sample - Soil Crust Dry out, 3 days (biological replicate B) D5B (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1223
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Four Geographically Distinct Crusts In The Colorado Plateau And Sonoran Desert

Source Dataset Sampling Location

• Location Name: Moab, Utah
• Coordinates
  • Lat. (^o): 38.714694
  • Long. (^o): -109.692944

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048032	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12271J12027_11129111	F048032	N/A	IMDNQKPNKKQPNTLPLAKLPIVTLTEKDMSSVNGGRIGLPGGD*
JGI12271J12027_11129112	F048032	GAGG	MDTKKQSQKPAKTLPLTQLPIVTLTEKDMSSVNGGSGYTWAG*
JGI12271J12027_11129113	F048032	GGAGG	MNTKKQDQKQAKTLPLVKLSIVTLTDKDMSSVNGGATQSWAG*
JGI12271J12027_11129114	F048032	GGAGG	MDNQKPDKKQGKTLPSTNLPIVTLTDKDMSSVNGGTQRVWSG*