Scaffold BS_KBA_SWE02_21mDRAFT_10084932

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold BS_KBA_SWE02_21mDRAFT_10084932

Scaffold BS_KBA_SWE02_21mDRAFT_10084932

Overview

Basic Information
Taxon OID	3300000792 Open in IMG/M
Scaffold ID	BS_KBA_SWE02_21mDRAFT_10084932 Open in IMG/M
Source Dataset Name	Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBA sample SWE 02_21m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	824
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location
Location Name	KBA site, Vaertahamnen, Baltic Sea, Sweden
Coordinates	Lat. (^o)	59.363333	Long. (^o)	18.119167	Alt. (m)		Depth (m)	21
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F080905	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
BS_KBA_SWE02_21mDRAFT_100849321	F080905	N/A	SKLHEHIKNNTPSGIKIKNAFASELPDQNMFTSTVTSGANRSTHHDLQIELGDALKTVEFKGSIHFKQIDATKPPWTNGVQFYNGPGNKFKVGSLYAKKFYDECLDKIIVDLDLKTPKPSYEEWVKDAFRQGKPKTPFVIELREKGYCGDYLSDARKQFNKSFMLSTFELTDLMIEVQKISEEVLNCKDFWLQIHGDIDDPDKFHVKWTNKIVMPEIVSVEQLKSKDNCDINFKFICDDNSEFFAKMRWGYGQCITNIRFDIK*

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