Scaffold JGI12421J11937_10013645

Overview

Basic Information

• Taxon OID: 3300000756
• Scaffold ID: JGI12421J11937_10013645
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3084
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002060	Metagenome / Metatranscriptome	597	Y
F010248	Metagenome / Metatranscriptome	306	Y
F017101	Metagenome / Metatranscriptome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_100136452	F017101	AGGAG	MDNTEKRMTVLESIIQDVAKALFQKWANALPEDQQSEENITNLNKNATESTYFVVKMFMDRFNAAAEELKAQPDEQ*
JGI12421J11937_100136454	F010248	N/A	MEMLRMQFQIEYVSRAVDILLGESKLKGPEMDAGKWYKTKLDKDN*
JGI12421J11937_100136457	F002060	N/A	MESSAIIIAICAAILSGMGTAIVAGIRDAAKEKNRRIERDXDHLXXEVKXLKIELXKIERELTEWKDKYYNTIQELIGVKAELEETMLKLSYIDHHIENLEALDREF*