Scaffold JGI12421J11937_10012425

Overview

Basic Information

• Taxon OID: 3300000756
• Scaffold ID: JGI12421J11937_10012425
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3249
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031094	Metagenome	183	Y
F038238	Metagenome / Metatranscriptome	166	N
F093854	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_1001242510	F093854	GAG	MSYIDNTKGNMMKEIYILELENEMLRKQITKLKLELNELLDSTQRTQAADDKERKATIG*
JGI12421J11937_100124256	F031094	N/A	VRLTNAQILNLKQISMKTVLIYENNFYPYNAQFIAQAGDNLFLDYEIDGSKFFLVKFRTIDLANNQIILSIIKL*
JGI12421J11937_100124259	F038238	N/A	MKLDYQGRQLKLHQRATCLLELLKKAQSEQARQEGLLAEWRAAGNYDNIRLFTHENNYLIRLAELNDIQKRILKSYYWLVVELYDITENFILPVNRVQ*