Scaffold JGI12421J11937_10002450

Overview

Basic Information

• Taxon OID: 3300000756
• Scaffold ID: JGI12421J11937_10002450
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7484
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041026	Metagenome / Metatranscriptome	160	Y
F052965	Metagenome / Metatranscriptome	142	Y
F055663	Metagenome	138	Y
F094945	Metagenome / Metatranscriptome	105	N
F106141	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_1000245011	F094945	GGA	MKPAIERGEKCYNACLTEEQVRLGRIYVMKGPVGTLPLCARRWGIATQTLRNAVIYKNWKHIPPPTPEEIENTPLPHWIDSIGAPHRSHCSMCVHWEHNCTMGIPEGGGFFATSCAAYATTSLAD*
JGI12421J11937_1000245013	F055663	N/A	MTDFVNLKIAQKQIVCPTHGTHKHYISSDIEGHEGHWCMLCWLESLGPSLPVVELEAM*
JGI12421J11937_1000245018	F106141	N/A	MTNTRAVFFQKGDERIVIWTNHTRWTVTDMVAGGTKRYTKQLAMALSASLMAEGYEATVHD*
JGI12421J11937_1000245020	F052965	GAGG	MDKPDLIEAAFRDWWEESYKRPPNAQAVMTHVAFAKHILALLELTQDVQTP*
JGI12421J11937_100024506	F041026	N/A	MTKIFRTIALELGRTLLKLAVDRALRKELPAIFAKLDIELPSMLVNHAKPLEMQAVVTDVIEEKIGGIATATQVSAVLGLYDPIKAAIRNLKR*