Scaffold JGI12421J11937_10000809

Overview

Basic Information

• Taxon OID: 3300000756
• Scaffold ID: JGI12421J11937_10000809
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12390
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009839	Metagenome / Metatranscriptome	312	N
F100975	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_1000080910	F100975	GGAGG	VKNKIVFWVENKPNQTFSYIYAGMKKAFERLGCEVHWFSDQSFPSQSEFDYSNCIFFVDNQGPLDHNVPIVNTGIYFAYDKFTNVNKYLDKVRCLVNYRVAEFKKPIPDDDRYVEIEKGVTFDTQAPEPYNVVYFSWATNLMPEEIDLDWVNKERNNEYNFVGTIHAPRPNAEPLHQQFIEIVKNKGISFNHYDPNVNPATDEDHVGILQKSMFVPDFRPQEQKGNWYLPCRVLKAISYGCLAVSDAPYLKNFIDDSILTSENAQEIFDIGVENQNNKELILHQMEIIKRDHTYLNRCRGILKIVEXVRDQ*
JGI12421J11937_100008095	F009839	N/A	MTAKFGCFHTVYENKKATEFVLQEFRKYHPEAPYTICCDGGVDYSDLCEKYNVNYVHSYMRIGRRNSGHPSGVYGFTKDESLHWIHMFREAARHVRENGGTHMIMMEDDVLTQGEVKINPIWECAGFEVPGNTIAPALLDFIRNKYGADPNVDWYGAGGGSIYNIETFLNNYHKIYDFIDFDFENILTNMDYRFGWLDLYMQIAYFAIGKHYSINTNLTEVWKTPNFRESDFTLVHAYKELY*