Scaffold JGI12421J11937_10000086

Overview

Basic Information

• Taxon OID: 3300000756
• Scaffold ID: JGI12421J11937_10000086
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30672
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (87.30%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016801	Metagenome / Metatranscriptome	244	Y
F051128	Metagenome / Metatranscriptome	144	N
F054848	Metagenome / Metatranscriptome	139	Y
F067733	Metagenome	125	N
F087184	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_1000008614	F016801	GGAG	VTTLAAIQGDGWSVLGCDSRASDEGGRYMDLATHKIVQNNGALIAVSGASRGGNIAQFGWKAPKPTRTENLDIFMTKKFIPSLRKAFQDAGYEGKDDGAAAEHDSNLIVSVQGVIYPIFNDYSWDREARNVYYSGSGGDIALGALEALSYRKVKTPEAAEKILRRAIEIAIQHDIYSGGEIHTFVQEE*
JGI12421J11937_1000008615	F087184	AGGA	MDIDVIIASVNAGVYDSSLTKLKEAIEDRLTASRSERTINDYHIGDTVVFNSLTGTRYMVGQKATVVSKKQKKVVVKLVTPTGRFARVNPITRDVESALVTVPVAIIDLV*
JGI12421J11937_100000863	F051128	N/A	MAKAQELPQAEKELLATLHKEQLWRRVQELNEAGWSLQSIANGFIPEKRRSTIRSWVVKELPEREVITAGFPIPKPPVKKVKSRRKRVPSPGIPLDEQLRIARLSPLARRYRARTAPSSSSFTANVELTSIAGVLYSKGVTVSELARASGVTYRAMKRRVDKASQ*
JGI12421J11937_1000008655	F067733	N/A	MPKLKDIARFTTPVDINDERTTPVTSSMVKPGLTFTETVRSILGRQTQPLSVLEITELVSRETKRPYDETYIRLALKELQGAGKVSSRKETSQERAIRGGGESNAARSMRASLFWSPAGIVPPRTVAEAVSGLTLFKPEQFTARKIYKYSTKKIQREHLDAQLNSVAPVPPTNSNAVVDYLIEKMVTERTAEIQSQLDAANAKLAKLQELFKSAL*
JGI12421J11937_100000867	F054848	GAGG	MSTDTATPTKAAELYTSGKSVVEVASELGVTYGKARKLIAEAGADIRNTSDRLKGKTRKAK*