Scaffold JGI12547J11936_1024035

Overview

Basic Information

• Taxon OID: 3300000736
• Scaffold ID: JGI12547J11936_1024035
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1422
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F002060	Metagenome / Metatranscriptome	597	Y
F011938	Metagenome / Metatranscriptome	285	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12547J11936_10240352	F002060	AGG	MDYTSVIIAISAAILSGAGTAIVAGIRDAAKERNRRAEREQDHLKIDLRDLKIELYKIEKELTEWKDKYYDAIQQLISVKAELEEALILVTHAEHHFDELDT*
JGI12547J11936_10240354	F011938	GGAGG	VKEYYDITHVVFIHAEDLHGTVEKLGAYASVVNYNKNGIEYNDLMENEEFTIVDEIVFTHIEDSN*
JGI12547J11936_10240355	F000473	AGAAG	MFIDKGQDRLKEHFKYGVNEWTGEPNKPVFYTPEMKKAVHQINKPSMLLMDIVMYPQFLALRLYEDNFLQFEGTKKEMVIDYVTKVKRLLESYGVRCELEGKPSERVL*