Scaffold JGI12547J11936_1020558

Overview

Basic Information

• Taxon OID: 3300000736
• Scaffold ID: JGI12547J11936_1020558
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1582
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008351	Metagenome / Metatranscriptome	334	Y
F018161	Metagenome / Metatranscriptome	236	N
F104441	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12547J11936_10205581	F104441	N/A	METSTSTDNPEKKQEIEKQKTLVADLFSTLNLVFTQTKLGVERSDLLFRAVHQFKTDILKIDPYWKLISWPHITIGRIFCSIDAI
JGI12547J11936_10205582	F018161	N/A	MSELESKPDYSARQQVVRKIYRILSRINCIPPFEDTINFRHLQRLHELMKELRSLDSEYPVTDIVQTSELNILKNLDRIQTTRSWDDAGNKLVYINIQGEISKIRKFHPDWDVDLDCIYRYHICRCLRCKSEGFLCTQHVLDSSNEISSPQSDTSDEGRPFPALNSKH*
JGI12547J11936_10205583	F008351	N/A	MDSDHEAESPERCSEESAHTVKESVEKLFSLMKIEFSRPSVPDEEEDFSLLKQICEAKANILKDNPYWSIFDDTTLLSNRALGRLDWLDTEGQWDGANNIENYKVIKEALRDLRGFNPNWKLEEQEIIRRVMCSYCGTVKSIPDKKTLPENNPEKAENQLSAGIRENSNSLD*