Scaffold JGI12547J11936_1015058

Overview

Basic Information

• Taxon OID: 3300000736
• Scaffold ID: JGI12547J11936_1015058
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1932
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F001019	Metagenome / Metatranscriptome	804	Y
F007468	Metagenome / Metatranscriptome	350	Y
F034924	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12547J11936_10150582	F034924	GGAG	MPLYRVFGTKFTNYYTIVSATDEYQAAELANARPLNEWDELPTDDVVEATDVFLDEDTLIDIEGGL*
JGI12547J11936_10150583	F001019	GAGG	MSNYEPSLEILEVEYSCSPGGIDLFEVYDKTDIPLSVPIYETESLTKAVLFCYNLGKDFTVRTLAEWNERELSYASV*
JGI12547J11936_10150584	F000441	AGGAGG	MKMSDIYINDQLSKAQALLWSGSLHEVDEAHNIVSKLIQDRMAWEEGTNV*
JGI12547J11936_10150586	F000263	AGG	METLYKDDELPLHLQRLVDAGVNGLDIMHGELKNLMLIAEEQLAWAQAIEDETEEAMDSMARTEAEGRLDTLVELYKLTYDLSFAIGARDEASR*
JGI12547J11936_10150587	F007468	GGAGG	LTTQTKSSKFIEYMKIHLISLNQDLEGDYNVQSKINIQGQIMATEHLLSVATDIMNENERV*