Scaffold JGI12547J11936_1009771

Overview

Basic Information

• Taxon OID: 3300000736
• Scaffold ID: JGI12547J11936_1009771
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2514
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036564	Metagenome / Metatranscriptome	169	N
F044916	Metagenome / Metatranscriptome	153	Y
F049419	Metagenome / Metatranscriptome	146	Y
F064403	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12547J11936_10097713	F049419	N/A	MKLPKLNILDLVTTYIFFGLVYGTIITLTWNYLFEQTFNIHLSILQGFGIHLIARILFGNTNTNYISNFYSQKTPDLDKIDDYLKEIQADLDKEADEVEKQYEDLNKKD*
JGI12547J11936_10097717	F044916	N/A	MGKKKVDKSRIEKGLEKEEKTFALMAKKIVDAIKDEKELRAFAKISLETLYKDNPNLFADHAKLKLKKK*
JGI12547J11936_10097718	F064403	GGA	MINPRSKILSDLKRSYLKEHPVSLVDRILGLLNNLTDFQLCQLYSEKYETNPKYIAEQFEFKF*
JGI12547J11936_10097719	F036564	AGGAGG	MKLGRVCVDLNYIVDIDNDEMVRHATEALYEDLMQGIKYGDLTNWIRVSEDKNATEDMIPEFLLDKEND*