Scaffold JGI12547J11936_1007617

Overview

Basic Information

• Taxon OID: 3300000736
• Scaffold ID: JGI12547J11936_1007617
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2896
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026210	Metagenome / Metatranscriptome	198	Y
F048101	Metagenome / Metatranscriptome	148	N
F066486	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12547J11936_10076173	F048101	AGGAG	MKKKIKTKKFKNLKEFLETCSEDEREYIYDLYNNASVADLIDLLFEHLPADDTIQEIQEYREEMEWDNNEAKKSNKPKRKCDCDFVGCQGC*
JGI12547J11936_10076175	F066486	N/A	MKNKTISKNDPYHLKVGKFKKKNVFDTQVDMGDRMREFFLGLGRQIITEDEFINIGFNYALIKGLGEAKKVKSKKK*
JGI12547J11936_10076178	F026210	AGGAG	MTQWINANPLNYDAKYPQVAESTNDDAKIFVMERNEGKEVMFQIEDGTQYYGRIGYVPNSEHYCVVVDRNGTPWEWYVREEAIHFVQEIGVKI*