NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12547J11936_1005553

Scaffold JGI12547J11936_1005553


Overview

Basic Information
Taxon OID3300000736 Open in IMG/M
Scaffold IDJGI12547J11936_1005553 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3427
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013634Metagenome / Metatranscriptome269Y
F025485Metagenome / Metatranscriptome201Y
F031456Metagenome / Metatranscriptome182Y
F051709Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
JGI12547J11936_10055532F025485N/AMENARKYLPLIVGSIVAIALFFVSRKMRKSEQTNTERSTILEKAREAKLAKSILRKTEEEDDSQSIAV*
JGI12547J11936_10055534F013634N/AMAIDPASAALIAGALGSFKQSKIAKAEAGEKTYTKPKTIFGKLIGGVSGRTAAAEVSASTKTAPLSSNVMNSLQPSAKGTPISGGFQFGGEASRKTYLPFAIVAAVVAAFYFMRKKGRGRRR*
JGI12547J11936_10055535F031456N/AMALIGTIPASGSQIFNLDFLPEKFLIDGTGEATQKLSNFSVVTSGIQLMSITDVARLTALAKFDSGALLSDPSSGNISTTASYLRLATGRINKATTISTTNGTIDVLNAFAASTNISNVARRAVEQSINPSANATFDNFEALIFSGANVLRAQITFANGFTDEYTPNELRALYGNYHVADLNGNLEGLVTIDADSGAGLISQVVLFAGAGAAVVVLKSDYVQL*
JGI12547J11936_10055537F051709N/AMIPNKERLGIEVAIRPHVNTIDVINSELQKVNGSIDRKFMQLDDFSASWSWTMWKNWKDSMEGELSYREYLKIVLEAYQK*
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