Scaffold JGI12547J11936_1005170

Overview

Basic Information

• Taxon OID: 3300000736
• Scaffold ID: JGI12547J11936_1005170
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3549
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003659	Metagenome / Metatranscriptome	474	Y
F008615	Metagenome / Metatranscriptome	330	N
F011474	Metagenome / Metatranscriptome	290	N
F030991	Metagenome / Metatranscriptome	183	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12547J11936_10051701	F008615	N/A	MNTINTFGAKMFGRFIRKGWHISFTDSYQDRVCVIPPERLDAKHLFGIYIPVLRHTWQPDLKREWWAALQDKNTMHGPTFEASAHPDDIERFAAFAAWIGDLLRNPEK
JGI12547J11936_100517010	F011474	GGA	MKAKIDHLTHFDIVVKEELASCTSAEDMLIVLARNYDLRQPLGGLTKAAFTIGLRTAVGMLRPEVNANANYKEKELKDTRFPHLKIFR*
JGI12547J11936_10051706	F003659	N/A	MTAADVLGRYLIAKKDVPIYDAPFGTRIGTIKKGNSTPEVYSYLVRQGQVFWVFDYTIPGQTPGAYYALQSPDAFSLSSVPGNVAIAPNVLPSVDVFPAGSIKKYAIFGALGLLALLILKK*
JGI12547J11936_10051708	F030991	N/A	MVLKYLGCDKKYFRYELYDGERMELYVETKLSARATAKLLFCNFGIKHIVLKIYSRTYGVKT*