Scaffold JGI12547J11936_1003701

Overview

Basic Information

• Taxon OID: 3300000736
• Scaffold ID: JGI12547J11936_1003701
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4245
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000141	Metagenome / Metatranscriptome	1941	Y
F004279	Metagenome / Metatranscriptome	445	Y
F021981	Metagenome / Metatranscriptome	216	N
F064719	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12547J11936_10037012	F064719	AGG	MVTVDVFYAVCYALLIAGVIGWYIQHVKENAAQLHYWRGRRDGWNLHRRMINNKAKTDEVFDYEKN*
JGI12547J11936_10037013	F021981	N/A	MPTTTEKLFNDATAIVHERGVVYGHAIYNMDRIAKSVSAYIDYPLSAHDIPIINILQKISRLAESPGHEDSIVDICAYMAIYKMCIDAEKDDEFEWRVGE*
JGI12547J11936_10037016	F004279	AGGGGG	MMGYVEIIRDGFTLRYENDKKTLTQSVDLCMACNDDRLIHSGDFLVCTQCHCRQ*
JGI12547J11936_10037017	F000141	AGGA	MDHPRFKCNGCNRDTEFLWLDQIDTPEGFSAYQCTSCGCVGVKNIVEALHVPDDDICRCGKCGGWMFHNVVCHTCSLISAK*