Scaffold JGI12547J11936_1001638

Overview

Basic Information

• Taxon OID: 3300000736
• Scaffold ID: JGI12547J11936_1001638
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6313
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002259	Metagenome / Metatranscriptome	577	Y
F006697	Metagenome / Metatranscriptome	366	Y
F011474	Metagenome / Metatranscriptome	290	N
F026828	Metagenome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12547J11936_100163813	F006697	N/A	MANQVQKLSYVDSKLGVSLPGQQTTRVIYDSVNAVAGQGFFQFFTNFAGKTEFQTNLTTNKLDSAESMVIKSIQLIGNFAGATPATLANHLNLNITVGNQVVVKDFDPSFNATNRGLSFDRLHSAFANGDNLEFRLLTEIVIPPQVNFKAELAISDAVNIALNDDITIIFKGYGRIFSAGNSF*
JGI12547J11936_100163814	F002259	N/A	MGMSAQDKMLNVASRLGLTSLKDMQGTTRMVYDSQTTAALTHTFFKGAAQRAFPLTNVGANGNQFQVNEALLVEKIGFFVPTAADGISYNGLNSALGNFSVKFDLVIGNKTVIKDVTCEVGGQQAFYTDGTVASAVIDLEGVGILIPPQVEYYVVAKQFLANSRVASSQRLGCYLFGTGALLNFNTTI*
JGI12547J11936_10016382	F026828	N/A	MNEELIANAIAFLAGWILKRPDFVQKILSKLFAKKDK*
JGI12547J11936_10016389	F011474	GGA	MKTKIDHLNHFDIVVKEELASCGSADEMLDVLAKNYDLRKPLGGLTKAAFTIGLRTAVGMLRPEVKADANYKTKELKDTRFPHLKIFS*